Delft is good and you have a nice studying environment near the large cities. It is very innovation- and business-oriented and generates lots of startups.
Eindhoven is more down-south and is more aimed at far-future high-tech innovations developed for specific target groups.
It gets less media exposure than Delft but has been internationally recognized as one of the best programs.
Especially if you want a lot of space to develop your own projects and be inspired this is a great program.